IL_6Q95_073
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_073 not in the Motif Atlas
- Homologous match to IL_7RQB_075
- Geometric discrepancy: 0.1928
- The information below is about IL_7RQB_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_56467.8
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
6Q95|1|1|G|1856
6Q95|1|1|G|1857
6Q95|1|1|G|1858
6Q95|1|1|A|1859
6Q95|1|1|G|1860
*
6Q95|1|1|C|1882
6Q95|1|1|G|1883
6Q95|1|1|A|1884
6Q95|1|1|A|1885
6Q95|1|1|C|1886
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L1
- Chain X
- 50S ribosomal protein L28
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