IL_6Q95_084
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCGUAGGAUAGG*CCC
- Length
- 15 nucleotides
- Bulged bases
- 6Q95|1|1|C|2111, 6Q95|1|1|U|2118, 6Q95|1|1|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_084 not in the Motif Atlas
- Geometric match to IL_4V88_406
- Geometric discrepancy: 0.3696
- The information below is about IL_4V88_406
- Detailed Annotation
- Isolated near basepair
- Broad Annotation
- Isolated near basepair
- Motif group
- IL_76004.2
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 18
Unit IDs
6Q95|1|1|G|2110
6Q95|1|1|C|2111
6Q95|1|1|G|2112
6Q95|1|1|U|2113
6Q95|1|1|A|2114
6Q95|1|1|G|2115
6Q95|1|1|G|2116
6Q95|1|1|A|2117
6Q95|1|1|U|2118
6Q95|1|1|A|2119
6Q95|1|1|G|2120
6Q95|1|1|G|2121
*
6Q95|1|1|C|2177
6Q95|1|1|C|2178
6Q95|1|1|C|2179
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 8
- Transfer RNA; tRNA
- Chain A
- 50S ribosomal protein L1
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