3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6Q95|1|1|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_098 not in the Motif Atlas
Homologous match to IL_4WF9_099
Geometric discrepancy: 0.1289
The information below is about IL_4WF9_099
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6Q95|1|1|U|2636
6Q95|1|1|U|2637
6Q95|1|1|G|2638
6Q95|1|1|A|2639
6Q95|1|1|G|2640
*
6Q95|1|1|C|2774
6Q95|1|1|A|2775
6Q95|1|1|A|2776
6Q95|1|1|G|2777
6Q95|1|1|A|2778
6Q95|1|1|U|2779
6Q95|1|1|G|2780
6Q95|1|1|A|2781
6Q95|1|1|G|2782

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain J
50S ribosomal protein L13

Coloring options:


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