IL_6Q95_113

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6Q95|1|2|G|129|||A, 6Q95|1|2|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_113 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.143

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6Q95|1|2|U|129
6Q95|1|2|G|129|||A
6Q95|1|2|A|130
6Q95|1|2|C|131
*
6Q95|1|2|G|231
6Q95|1|2|G|232

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17

Chain y

30S ribosomal protein S20