IL_6Q95_115

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6Q95|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_115 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1491

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|2|G|148
6Q95|1|2|A|149
6Q95|1|2|C|150
6Q95|1|2|A|151
6Q95|1|2|A|152
6Q95|1|2|C|153
*
6Q95|1|2|G|168
6Q95|1|2|C|169
6Q95|1|2|U|170
6Q95|1|2|A|171
6Q95|1|2|A|172
6Q95|1|2|U|173
6Q95|1|2|C|174

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain y

30S ribosomal protein S20