IL_6Q95_124

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_124 not in the Motif Atlas

Geometric match to IL_6CZR_130

Geometric discrepancy: 0.1537

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6Q95|1|2|G|446
6Q95|1|2|G|447
6Q95|1|2|A|448
6Q95|1|2|C|449
6Q95|1|2|G|450
*
6Q95|1|2|C|483
6Q95|1|2|G|484
6Q95|1|2|G|485
6Q95|1|2|U|486
6Q95|1|2|A|487
6Q95|1|2|C|488

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16