IL_6Q95_125

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_125 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1576

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|2|G|450
6Q95|1|2|A|451
6Q95|1|2|A|452
6Q95|1|2|A|453
6Q95|1|2|C|454
6Q95|1|2|C|455
*
6Q95|1|2|G|476
6Q95|1|2|A|477
6Q95|1|2|C|479
6Q95|1|2|U|480
6Q95|1|2|G|481
6Q95|1|2|A|482
6Q95|1|2|C|483

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain u

30S ribosomal protein S16