IL_6Q95_147

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_147 not in the Motif Atlas

Homologous match to IL_6CZR_151

Geometric discrepancy: 0.3831

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6Q95|1|2|G|993
6Q95|1|2|A|994
6Q95|1|2|C|995
6Q95|1|2|A|996
6Q95|1|2|U|997
*
6Q95|1|2|A|1044
6Q95|1|2|C|1045

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain s

30S ribosomal protein S14 type Z