IL_6Q95_161

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_161 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.16

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6Q95|1|2|G|1401
6Q95|1|2|C|1402
6Q95|1|2|C|1403
6Q95|1|2|C|1404
*
6Q95|1|2|G|1497
6Q95|1|2|U|1498
6Q95|1|2|A|1499
6Q95|1|2|A|1500
6Q95|1|2|C|1501

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 7

Transfer RNA; tRNA

Chain 9

mRNA