IL_6Q95_176

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_176 not in the Motif Atlas

Geometric match to IL_4V9F_081

Geometric discrepancy: 0.3474

The information below is about IL_4V9F_081

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6Q95|1|4|C|27
6Q95|1|4|G|28
6Q95|1|4|C|29
*
6Q95|1|4|G|310
6Q95|1|4|G|311

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 5

SsrA-binding protein

Chain x

30S ribosomal protein S19