IL_6Q95_192

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6Q95|1|1|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_192 not in the Motif Atlas

Homologous match to IL_9DFE_062

Geometric discrepancy: 0.3748

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09044.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6Q95|1|1|G|1526
6Q95|1|1|G|1527
6Q95|1|1|A|1528
6Q95|1|1|A|1528|||A
6Q95|1|1|G|1529
*
6Q95|1|1|U|1540
6Q95|1|1|G|1541
6Q95|1|1|A|1542
6Q95|1|1|C|1543
6Q95|1|1|A|1544
6Q95|1|1|A|1545
6Q95|1|1|C|1546

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains