IL_6Q95_196
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_196 not in the Motif Atlas
- Homologous match to IL_5J7L_361
- Geometric discrepancy: 0.1183
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6Q95|1|2|G|673
6Q95|1|2|G|674
6Q95|1|2|A|675
6Q95|1|2|A|676
6Q95|1|2|U|677
*
6Q95|1|2|G|713
6Q95|1|2|G|714
6Q95|1|2|A|715
6Q95|1|2|A|716
6Q95|1|2|C|717
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S6
- Chain p
- 30S ribosomal protein S11
- Chain w
- 30S ribosomal protein S18
Coloring options: