IL_6Q95_200
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUC*GUCUG
- Length
- 9 nucleotides
- Bulged bases
- 6Q95|1|2|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_200 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2574
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6Q95|1|2|C|1060
6Q95|1|2|G|1061
6Q95|1|2|U|1062
6Q95|1|2|C|1063
*
6Q95|1|2|G|1193
6Q95|1|2|U|1194
6Q95|1|2|C|1195
6Q95|1|2|U|1196
6Q95|1|2|G|1197
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain h
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S5
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14 type Z
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