IL_6Q97_026

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_026 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.288

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6Q97|1|1|C|851
6Q97|1|1|U|852
6Q97|1|1|C|853
6Q97|1|1|C|854
*
6Q97|1|1|G|924
6Q97|1|1|A|925
6Q97|1|1|G|926

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27

Chain Z

50S ribosomal protein L30