IL_6Q97_035
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 6Q97|1|1|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_035 not in the Motif Atlas
- Geometric match to IL_7A0S_098
- Geometric discrepancy: 0.2063
- The information below is about IL_7A0S_098
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6Q97|1|1|G|997
6Q97|1|1|C|998
6Q97|1|1|U|999
6Q97|1|1|A|1000
6Q97|1|1|A|1001
6Q97|1|1|G|1002
*
6Q97|1|1|C|1153
6Q97|1|1|G|1154
6Q97|1|1|A|1155
6Q97|1|1|A|1156
6Q97|1|1|G|1157
6Q97|1|1|C|1158
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
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