IL_6Q97_046
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAAGUAAC*GUGAAAUU
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_046 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2739
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q97|1|1|A|1262
6Q97|1|1|U|1263
6Q97|1|1|A|1264
6Q97|1|1|A|1265
6Q97|1|1|G|1266
6Q97|1|1|U|1267
6Q97|1|1|A|1268
6Q97|1|1|A|1269
6Q97|1|1|C|1270
*
6Q97|1|1|G|2010
6Q97|1|1|U|2011
6Q97|1|1|G|2012
6Q97|1|1|A|2013
6Q97|1|1|A|2014
6Q97|1|1|A|2015
6Q97|1|1|U|2016
6Q97|1|1|U|2017
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain D
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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