IL_6Q97_049

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_049 not in the Motif Atlas

Geometric match to IL_7A0S_098

Geometric discrepancy: 0.2532

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6Q97|1|1|C|1350
6Q97|1|1|C|1351
6Q97|1|1|U|1352
6Q97|1|1|A|1353
6Q97|1|1|A|1354
6Q97|1|1|G|1355
*
6Q97|1|1|C|1376
6Q97|1|1|G|1377
6Q97|1|1|A|1378
6Q97|1|1|U|1379
6Q97|1|1|G|1380
6Q97|1|1|G|1381

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34