IL_6Q97_079

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGA*UCUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_079 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.344

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6Q97|1|1|C|2084
6Q97|1|1|U|2085
6Q97|1|1|U|2086
6Q97|1|1|G|2087
6Q97|1|1|A|2088
*
6Q97|1|1|U|2231
6Q97|1|1|C|2232
6Q97|1|1|U|2233
6Q97|1|1|G|2234
6Q97|1|1|G|2235

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28