IL_6Q97_101
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_101 not in the Motif Atlas
- Homologous match to IL_5J7L_346
- Geometric discrepancy: 0.1786
- The information below is about IL_5J7L_346
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q97|1|1|C|2652
6Q97|1|1|U|2653
6Q97|1|1|A|2654
6Q97|1|1|G|2655
6Q97|1|1|U|2656
6Q97|1|1|A|2657
6Q97|1|1|C|2658
*
6Q97|1|1|G|2663
6Q97|1|1|G|2664
6Q97|1|1|A|2665
6Q97|1|1|C|2666
6Q97|1|1|C|2667
6Q97|1|1|G|2668
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain K
- 50S ribosomal protein L14
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