IL_6Q97_149

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

6Q97|1|2|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_149 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.2612

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6Q97|1|2|G|925
6Q97|1|2|G|926
6Q97|1|2|G|927
6Q97|1|2|G|928
*
6Q97|1|2|C|1389
6Q97|1|2|U|1390
6Q97|1|2|U|1391

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 9

mRNA