IL_6Q97_156
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGUC*GUCAAG
- Length
- 11 nucleotides
- Bulged bases
- 6Q97|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_156 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3385
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Q97|1|2|C|1059
6Q97|1|2|U|1060
6Q97|1|2|G|1061
6Q97|1|2|U|1062
6Q97|1|2|C|1063
*
6Q97|1|2|G|1193
6Q97|1|2|U|1194
6Q97|1|2|C|1195
6Q97|1|2|A|1196
6Q97|1|2|A|1197
6Q97|1|2|G|1198
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain h
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S5
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14
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