IL_6Q97_175
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAGG*CCGAGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_175 not in the Motif Atlas
- Geometric match to IL_6JXM_001
- Geometric discrepancy: 0.3284
- The information below is about IL_6JXM_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6Q97|1|4|C|37
6Q97|1|4|A|38
6Q97|1|4|A|39
6Q97|1|4|G|40
6Q97|1|4|G|41
*
6Q97|1|4|C|313
6Q97|1|4|C|314
6Q97|1|4|G|315
6Q97|1|4|A|316
6Q97|1|4|G|317
6Q97|1|4|G|318
Current chains
- Chain 4
- transfer-messenger RNA (tmRNA)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain x
- 30S ribosomal protein S19
Coloring options: