IL_6Q97_184

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGC*GACUU

Length

9 nucleotides

Bulged bases

6Q97|1|1|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_184 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2708

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6Q97|1|1|G|695
6Q97|1|1|G|696
6Q97|1|1|G|697
6Q97|1|1|C|698
*
6Q97|1|1|G|763
6Q97|1|1|A|764
6Q97|1|1|C|765
6Q97|1|1|U|766
6Q97|1|1|U|767

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34