IL_6Q97_195

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGC*GUCC

Length

7 nucleotides

Bulged bases

6Q97|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_195 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2965

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6Q97|1|1|G|1449
6Q97|1|1|G|1450
6Q97|1|1|C|1451
*
6Q97|1|1|G|1459
6Q97|1|1|U|1460
6Q97|1|1|C|1461
6Q97|1|1|C|1462

Current chains

Chain 1

23S ribosomal RNA

Nearby chains