IL_6Q97_201
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUGC*GAUGGC
- Length
- 11 nucleotides
- Bulged bases
- 6Q97|1|1|A|1981
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_201 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3997
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6Q97|1|1|G|1767
6Q97|1|1|C|1768
6Q97|1|1|U|1769
6Q97|1|1|G|1770
6Q97|1|1|C|1771
*
6Q97|1|1|G|1980
6Q97|1|1|A|1981
6Q97|1|1|U|1982
6Q97|1|1|G|1983
6Q97|1|1|G|1984
6Q97|1|1|C|1985
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: