IL_6Q97_214

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCCU*AAGGGU

Length

11 nucleotides

Bulged bases

6Q97|1|1|C|2795, 6Q97|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_214 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3811

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6Q97|1|1|A|2792
6Q97|1|1|C|2793
6Q97|1|1|C|2794
6Q97|1|1|C|2795
6Q97|1|1|U|2796
*
6Q97|1|1|A|2799
6Q97|1|1|A|2800
6Q97|1|1|G|2801
6Q97|1|1|G|2802
6Q97|1|1|G|2803
6Q97|1|1|U|2804

Current chains

Chain 1

23S ribosomal RNA

Nearby chains