IL_6Q97_232
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGUGG*CACACG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_232 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3969
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6Q97|1|2|U|950
6Q97|1|2|G|951
6Q97|1|2|U|952
6Q97|1|2|G|953
6Q97|1|2|G|954
*
6Q97|1|2|C|1226
6Q97|1|2|A|1227
6Q97|1|2|C|1228
6Q97|1|2|A|1229
6Q97|1|2|C|1230
6Q97|1|2|G|1231
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 5
- SsrA-binding protein
- Chain 7
- Transfer RNA; tRNA
- Chain n
- 30S ribosomal protein S9
- Chain r
- 30S ribosomal protein S13
- Chain x
- 30S ribosomal protein S19
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