3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
6Q98|1|1|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q98_045 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.214
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

6Q98|1|1|G|1432
6Q98|1|1|A|1433
6Q98|1|1|A|1434
6Q98|1|1|G|1435
*
6Q98|1|1|C|1557
6Q98|1|1|C|1558
6Q98|1|1|U|1559
6Q98|1|1|G|1560
6Q98|1|1|C|1561

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2

Coloring options:


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