IL_6Q98_052

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_052 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.219

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6Q98|1|1|C|1526
6Q98|1|1|G|1527
6Q98|1|1|A|1528
6Q98|1|1|G|1529
*
6Q98|1|1|U|1542
6Q98|1|1|G|1543
6Q98|1|1|A|1544
6Q98|1|1|A|1545
6Q98|1|1|G|1546

Current chains

Chain 1

23S ribosomal RNA

Nearby chains