3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q98_065 not in the Motif Atlas
Homologous match to IL_5J7L_318
Geometric discrepancy: 0.1929
The information below is about IL_5J7L_318
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

6Q98|1|1|G|1933
6Q98|1|1|C|1934
*
6Q98|1|1|G|1964
6Q98|1|1|C|1965
6Q98|1|1|A|1966
6Q98|1|1|C|1967

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 4
Transfer-messenger RNA; tmRNA

Coloring options:


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