IL_6Q98_109

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6Q98|1|2|U|244, 6Q98|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_109 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1848

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6Q98|1|2|G|242
6Q98|1|2|A|243
6Q98|1|2|U|244
6Q98|1|2|U|245
6Q98|1|2|A|246
6Q98|1|2|G|247
*
6Q98|1|2|C|277
6Q98|1|2|G|278
6Q98|1|2|A|279
6Q98|1|2|C|280
6Q98|1|2|G|281
6Q98|1|2|A|282
6Q98|1|2|U|283
6Q98|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17