IL_6Q98_119

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_119 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.181

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6Q98|1|2|C|504
6Q98|1|2|G|505
6Q98|1|2|G|506
6Q98|1|2|C|507
6Q98|1|2|U|508
6Q98|1|2|A|509
6Q98|1|2|A|510
6Q98|1|2|C|511
*
6Q98|1|2|G|540
6Q98|1|2|G|541

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12