IL_6Q98_130

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGUAG*CGUAGAGAU

Length

15 nucleotides

Bulged bases

6Q98|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_130 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.2518

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6Q98|1|2|G|683
6Q98|1|2|U|684
6Q98|1|2|G|685
6Q98|1|2|U|686
6Q98|1|2|A|687
6Q98|1|2|G|688
*
6Q98|1|2|C|699
6Q98|1|2|G|700
6Q98|1|2|U|701
6Q98|1|2|A|702
6Q98|1|2|G|703
6Q98|1|2|A|704
6Q98|1|2|G|705
6Q98|1|2|A|706
6Q98|1|2|U|707

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11

Chain w

30S ribosomal protein S18