IL_6Q98_144

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_144 not in the Motif Atlas

Geometric match to IL_3RW6_003

Geometric discrepancy: 0.2564

The information below is about IL_3RW6_003

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6Q98|1|2|C|1129
6Q98|1|2|A|1130
6Q98|1|2|G|1131
6Q98|1|2|C|1132
*
6Q98|1|2|G|1142
6Q98|1|2|G|1143

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S9