3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GCG*UGU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q98_173 not in the Motif Atlas
Geometric match to IL_7A0S_107
Geometric discrepancy: 0.2684
The information below is about IL_7A0S_107
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6Q98|1|1|G|377
6Q98|1|1|C|378
6Q98|1|1|G|379
*
6Q98|1|1|U|395
6Q98|1|1|G|396
6Q98|1|1|U|397

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain X
50S ribosomal protein L28

Coloring options:


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