IL_6Q98_178
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAAGG*UCGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_178 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.213
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6Q98|1|1|G|1038
6Q98|1|1|A|1039
6Q98|1|1|A|1040
6Q98|1|1|G|1041
6Q98|1|1|G|1042
*
6Q98|1|1|U|1113
6Q98|1|1|C|1114
6Q98|1|1|G|1115
6Q98|1|1|G|1116
6Q98|1|1|C|1117
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L6
- Chain H
- 50S ribosomal protein L10
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain f
- 50S ribosomal protein L36
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