IL_6Q98_188
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GCAAG*CUGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_188 not in the Motif Atlas
- Geometric match to IL_7A0S_058
- Geometric discrepancy: 0.366
- The information below is about IL_7A0S_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48444.6
- Basepair signature
- cWW-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Q98|1|1|G|2049
6Q98|1|1|C|2050
6Q98|1|1|A|2051
6Q98|1|1|A|2052
6Q98|1|1|G|2053
*
6Q98|1|1|C|2616
6Q98|1|1|U|2617
6Q98|1|1|G|2618
6Q98|1|1|C|2619
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain b
- 50S ribosomal protein L32
Coloring options: