3D structure

PDB id
6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
GCAAG*CUGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q98_188 not in the Motif Atlas
Geometric match to IL_7A0S_058
Geometric discrepancy: 0.366
The information below is about IL_7A0S_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_48444.6
Basepair signature
cWW-L-R-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6Q98|1|1|G|2049
6Q98|1|1|C|2050
6Q98|1|1|A|2051
6Q98|1|1|A|2052
6Q98|1|1|G|2053
*
6Q98|1|1|C|2616
6Q98|1|1|U|2617
6Q98|1|1|G|2618
6Q98|1|1|C|2619

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain b
50S ribosomal protein L32

Coloring options:


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