IL_6Q98_191
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUAUAG*UGGGUAG
- Length
- 13 nucleotides
- Bulged bases
- 6Q98|1|1|G|2238
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_191 not in the Motif Atlas
- Geometric match to IL_6DVK_004
- Geometric discrepancy: 0.3984
- The information below is about IL_6DVK_004
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.2
- Basepair signature
- cWW-tSH-tHW-L-R-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6Q98|1|1|C|2078
6Q98|1|1|U|2079
6Q98|1|1|A|2080
6Q98|1|1|U|2081
6Q98|1|1|A|2082
6Q98|1|1|G|2083
*
6Q98|1|1|U|2236
6Q98|1|1|G|2237
6Q98|1|1|G|2238
6Q98|1|1|G|2239
6Q98|1|1|U|2240
6Q98|1|1|A|2241
6Q98|1|1|G|2242
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain X
- 50S ribosomal protein L28
Coloring options: