IL_6Q98_207

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6Q98|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_207 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2781

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6Q98|1|2|G|147
6Q98|1|2|G|148
6Q98|1|2|A|149
6Q98|1|2|U|150
6Q98|1|2|A|151
6Q98|1|2|A|152
6Q98|1|2|C|153
*
6Q98|1|2|G|168
6Q98|1|2|C|169
6Q98|1|2|U|170
6Q98|1|2|A|171
6Q98|1|2|A|172
6Q98|1|2|U|173
6Q98|1|2|A|174
6Q98|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20