IL_6Q9A_040

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6Q9A|1|1|U|1061

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_040 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.437

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6Q9A|1|1|G|1059
6Q9A|1|1|U|1060
6Q9A|1|1|U|1061
6Q9A|1|1|G|1062
*
6Q9A|1|1|C|1076
6Q9A|1|1|A|1077
6Q9A|1|1|U|1078
6Q9A|1|1|C|1079

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L10

Chain I

50S ribosomal protein L11