IL_6Q9A_099
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6Q9A|1|1|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q9A_099 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.1055
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6Q9A|1|1|C|2636
6Q9A|1|1|U|2637
6Q9A|1|1|G|2638
6Q9A|1|1|A|2639
6Q9A|1|1|G|2640
*
6Q9A|1|1|C|2774
6Q9A|1|1|G|2775
6Q9A|1|1|A|2776
6Q9A|1|1|G|2777
6Q9A|1|1|A|2778
6Q9A|1|1|U|2779
6Q9A|1|1|G|2780
6Q9A|1|1|A|2781
6Q9A|1|1|G|2782
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
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