IL_6Q9A_143

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6Q9A|1|2|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_143 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1937

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6Q9A|1|2|U|684
6Q9A|1|2|G|685
6Q9A|1|2|U|686
6Q9A|1|2|A|687
6Q9A|1|2|G|688
*
6Q9A|1|2|C|699
6Q9A|1|2|G|700
6Q9A|1|2|U|701
6Q9A|1|2|A|702
6Q9A|1|2|G|703
6Q9A|1|2|A|704
6Q9A|1|2|G|705
6Q9A|1|2|A|706

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11