IL_6Q9A_187

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACG*CGUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q9A_187 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3052

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6Q9A|1|1|C|1167
6Q9A|1|1|G|1168
6Q9A|1|1|A|1169
6Q9A|1|1|C|1170
6Q9A|1|1|G|1171
*
6Q9A|1|1|C|1178
6Q9A|1|1|G|1179
6Q9A|1|1|U|1180
6Q9A|1|1|U|1181
6Q9A|1|1|G|1182

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30