IL_6QDW_003
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- 6QDW|1|a|U|25
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_003 not in the Motif Atlas
- Homologous match to IL_7A0S_103
- Geometric discrepancy: 0.3579
- The information below is about IL_7A0S_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.5
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6QDW|1|a|G|23
6QDW|1|a|G|24
6QDW|1|a|U|25
6QDW|1|a|C|26
6QDW|1|a|C|27
6QDW|1|a|C|28
*
6QDW|1|a|G|56
6QDW|1|a|A|57
6QDW|1|a|A|58
6QDW|1|a|A|59
6QDW|1|a|C|60
Current chains
- Chain a
- 5S rRNA
Nearby chains
- Chain f
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
Coloring options: