IL_6QDW_014
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_014 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0714
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6QDW|1|b|C|239
6QDW|1|b|C|240
6QDW|1|b|A|241
6QDW|1|b|G|242
6QDW|1|b|U|243
6QDW|1|b|A|244
6QDW|1|b|G|245
*
6QDW|1|b|C|253
6QDW|1|b|G|254
6QDW|1|b|A|255
6QDW|1|b|A|256
6QDW|1|b|C|257
6QDW|1|b|G|258
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
Coloring options: