IL_6QDW_021
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_021 not in the Motif Atlas
- Homologous match to IL_5J7L_258
- Geometric discrepancy: 0.0591
- The information below is about IL_5J7L_258
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6QDW|1|b|U|608
6QDW|1|b|U|609
6QDW|1|b|A|610
6QDW|1|b|A|611
6QDW|1|b|C|612
*
6QDW|1|b|G|620
6QDW|1|b|G|621
6QDW|1|b|G|622
6QDW|1|b|A|623
6QDW|1|b|G|624
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
Coloring options: