IL_6QDW_023
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6QDW|1|b|G|803, 6QDW|1|b|G|807
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_023 not in the Motif Atlas
- Homologous match to IL_7RQB_018
- Geometric discrepancy: 0.0684
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QDW|1|b|G|676
6QDW|1|b|A|677
6QDW|1|b|A|678
6QDW|1|b|A|679
6QDW|1|b|C|680
*
6QDW|1|b|G|801
6QDW|1|b|A|802
6QDW|1|b|G|803
6QDW|1|b|A|804
6QDW|1|b|U|805
6QDW|1|b|A|806
6QDW|1|b|G|807
6QDW|1|b|C|808
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
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