3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QDW_031 not in the Motif Atlas
Geometric match to IL_5J7L_270
Geometric discrepancy: 0.077
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6QDW|1|b|G|858
6QDW|1|b|G|859
6QDW|1|b|G|860
6QDW|1|b|G|861
6QDW|1|b|U|862
6QDW|1|b|A|863
6QDW|1|b|G|864
*
6QDW|1|b|C|917
6QDW|1|b|G|918
6QDW|1|b|A|919
6QDW|1|b|A|920
6QDW|1|b|U|921
6QDW|1|b|A|922
6QDW|1|b|C|923

Current chains

Chain b
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L30
Chain a
5S ribosomal RNA; 5S rRNA
Chain m
50S ribosomal protein L16
Chain y
50S ribosomal protein L27

Coloring options:


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