IL_6QDW_035

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

6QDW|1|b|A|879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_035 not in the Motif Atlas

Geometric match to IL_5TBW_023

Geometric discrepancy: 0.3547

The information below is about IL_5TBW_023

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6QDW|1|b|G|877
6QDW|1|b|C|878
6QDW|1|b|A|879
6QDW|1|b|A|880
6QDW|1|b|G|881
*
6QDW|1|b|C|900
6QDW|1|b|A|901
6QDW|1|b|A|902
6QDW|1|b|C|903
6QDW|1|b|C|904

Current chains

Chain b

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L16