3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6QDW|1|b|A|1158
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QDW_037 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.0627
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6QDW|1|b|C|1000
6QDW|1|b|U|1001
6QDW|1|b|A|1002
6QDW|1|b|A|1003
6QDW|1|b|G|1004
*
6QDW|1|b|C|1155
6QDW|1|b|G|1156
6QDW|1|b|A|1157
6QDW|1|b|A|1158
6QDW|1|b|G|1159

Current chains

Chain b
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L30
Chain a
5S ribosomal RNA; 5S rRNA
Chain q
50S ribosomal protein L20
Chain r
50S ribosomal protein L21

Coloring options:


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