IL_6QDW_037
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 6QDW|1|b|A|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_037 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0627
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
6QDW|1|b|C|1000
6QDW|1|b|U|1001
6QDW|1|b|A|1002
6QDW|1|b|A|1003
6QDW|1|b|G|1004
*
6QDW|1|b|C|1155
6QDW|1|b|G|1156
6QDW|1|b|A|1157
6QDW|1|b|A|1158
6QDW|1|b|G|1159
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
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